17 Metabolic Enzyme Example:Detailed Facts

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Metabolic enzymes are loosely defined enzymes involved in various metabolically important reactions necessary for life and homeostasis.

Some Metabolic enzymes examples include:

  1. Phosphofructokinase
  2. Pyruvate kinase
  3. Pancreatic lipase
  4. Hepatic lipase
  5. Lysosomal lipase
  6. Phospholipases
  7. Amylases
  8. Bromelain
  9. Papain
  10. Trypsin
  11. Chymotrypsin
  12. Alkaline phosphatase
  13. Alanine transaminase
  14. Aspartate transaminase
  15. Lactase
  16. Maltase
  17. Enterokinase

They are the proteins involved in many cellular functions and at organ levels and hence are necessary for survival.

1. Phosphofructokinase

It belongs to the sugar kinase family. It is involved in a catabolic reaction in glycolysis. It is also called the pacemaker of the glycolysis pathway. Its deficiency leads to glycogenosis IV, which makes this enzyme clinically significant. The symptoms of its deficiency are muscle cramps, vomiting, and nauseated also might lead to myoglobinuria.

2. Pyruvate Kinase

It is the last enzyme involved in the glycolysis pathway. Genetic defects causing deficiency of this metabolic enzyme lead to chronic nonspherocytic hemolytic anaemia (CNSHA). There are four tissue-specific isozymes of this enzyme. Any mutation in the gene coding this enzyme might lead to a lack of mitochondria in the tissue.

3. Pancreatic Lipase

It is an essential enzyme of the digestive system involved in the digestion of triglycerides. It does so by digesting the ester linkage in the triglycerides. It is a clinically significant protein since its level serves as a diagnosis for tissue/organ functionality.

metabolic enzyme example
Pancreatic Lipase as a Metabolic enzyme example. Wikipedia

4. Hepatic Lipase

It is also called hepatic triglyceride lipase (HTGL). As the name suggests, it is involved in the hydrolysis of triglycerides. These enzymes are expressed in the hepatocytes of the liver. One of its primary roles includes the conversion of intermediate-density lipoprotein to low-density lipoprotein.

5. Lysosomal Lipase

Its role is mainly in lipid catabolism. However, it acts intracellularly. It is also involved in the hydrolysis of cholesterol. However, they are involved in the metabolic reprogramming of memory T-cells.

6. Phospholipases

They are the lipolytic enzymes that hydrolyze the phosphate group of the lipid at the ester linkage. Along with its role in lipid metabolism, it has roles in metabolite digestion and signals transductions within cells. Based on their function, they are classified into four types – namely Phospholipase A1, Phospholipase A2, Phospholipase Cand Phospholipase D.

metabolic enzyme example
Phospholipase as a Metabolic enzyme example. Wikipedia

7. Amylases

It is involved in the hydrolysis of starch into sugar. In humans, it is mainly found in saliva. Thus, we get a sweet taste from starch-rich foods like rice and potato. Pancreas also secrete amylase, which further breaks down the starch in the GI tract

8. Bromelain

It is a group of an enzyme belonging to plants. It is found abundantly in fruits, specifically the stem of the pineapple plant. It is widely used as a dietary supplement for problems related to the digestive system and inflammation and pain.

9. Papain

It is a protease enzyme found in papaya, from where it also got its name. This enzyme is of clinical importance due to its medicinal properties. It is also widely used dermatologically.

10. Trypsin

It is the enzyme secreted by the pancreas but acts in the small intestine. It is metabolically vital because it starts the protein digestion in the GI tract. The process of digestion by trypsin is referred to as trypsinization. Deficiency in this enzyme can lead to meconium ileus, which means obstruction of the intestine. Also, the hyperactivity of this enzyme leads to pancreatitis, where the enzyme leads to the self-digestion of the pancreas.

metabolic enzyme example
Trypsin as a Metabolic enzyme example. Wikipedia

11. Chymotrypsin

It is an enzyme secreted by the pancreas but acts in the duodenum to digest the proteins. It is secreted as an inactive enzyme by the pancreas and activated by enterokinase secreted by the small intestine.

12. Alkaline phosphatase

Commonly referred to as ALP, is a crucial liver enzyme active at basic pH. Its physiological role includes dephosphorylation of the substrate. It is also involved in skeleton development. Levels of ALP serve as a check for liver activity. Abnormal levels of ALP in circulation lead to liver stones, gall bladder stones or kidney stones.

13. Alanine transaminase

Famously known as ALP or serum glutamic-pyruvic transaminase (SGPT), the most common test for liver failure and function. In liver failure conditions, the levels of ALP increase in blood circulation. Therefore it is considered a clinical biomarker for liver health. It carries a transamination reaction in liver cells, essential for the urea cycle.

14. Aspartate transaminase

Like ALP, it is a liver enzyme involved in the urea cycle. However, it is also found in muscles. Blood tests generally include Aspartate transaminase levels (AST) as liver and kidney health indicators.

15. Lactase

In humans, this enzyme is produced by the brush border cells of the small intestine and is involved in the complete digestion of milk. This enzyme is a deficit in infants and also in older people. Some people suffer from its deficiency. This cannot digest milk products. This condition is called lactose intolerance.

metabolic-enzyme-example
Lactase as a Metabolic enzyme example. Wikipedia

16. Maltase

It is a type of glucosidase. It breaks down maltose to glucose. In humans, it is secreted by the brush-bordered cells of the small intestine.

17. Enterokinase

Also called enteropeptidase. The small intestine secretes it, but it acts on the pancreatic enzymes by converting the various inactive peptidases to their active form.

Conclusion

Metabolic enzymes are proteins which act on a different forms of substrates and aid in physiological pathways necessarily at organ levels. Due to their importance in maintaining the homeostasis at organ level, any deficiency in metabolic enzymes leads to defects in organ function and sometimes failure. Our article summarizes some of the important metabolic enzymes along with facts regarding their function and clinical imporance.

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19 Lyase Enzyme Example: Detailed Facts

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Lyases catalyse the breakage of chemical bonds without undergoing hydrolysis or oxidation, leading to a new bond or ring structure.

Lyase belongs to the 4th class of the Enzyme group. They are divided into different subclasses depending on the substrate specificity.

  • Decarboxylases
  • Aldolases
  • Fructose-6-phosphate phosphoketolase
  • Isocitrate lyase
  • Oxalomalate lyase
  • Photolyase
  • Dehydratses
  • Hydratases
  • Aconitase
  • Chondroitin lyase
  • Heparin lyase
  • Carboxymethyloxysuccinate lyase
  • Aspartate ammonia lyase
  • Adenylosuccinate lyase
  • Pyridoxal 5’ phosphate synthase
  • Cysteine lyase
  • Phosphoketolase
  • Dehalogenases
  • Guanylate cyclase
  • Ferrochelatase

1. Decarboxylases

Also called carboxy-lyase, catalyze the addition or removal of carbon-carbon bonds in an organic compound. Some examples under decarboxylases are pyruvate decarboxylases, glutamate decarboxylases etc.

2. Aldolases

It is a common name for Fructose biphosphate aldolases. It breaks the carbon-carbon bond in fructose 1,6 biphosphate, leading to two carbonyl compounds. It is an essential enzyme in the glycolysis pathway.

3. Fructose-6-phosphate

It belongs to the aldehyde-lyase family of enzymes, where it breaks carbon-carbon bonds and forms an aldehyde containing byproduct.

4. Isocitrate Lyase

It is an enzyme in the glyoxylate pathway where it cleaves isocitrate to produce succinate and glyoxylate.

lyase enzyme example
Isocitrate Lyase as a Lyase enzyme example. Wikipedia

5. Oxalomalate Lyase

This is another carbon-carbon lyase enzyme. As the name suggests, its action substrate is oxalomalate and thus participates in decarboxylate metabolism

6. Photolyase

This is a unique type of lyase mainly because it requires light for its activity. It is involved in DNA repair mechanisms.

lyase enzyme example
Photolyase as a Lyase enzyme example. Wikipedia

7. Dehydratase

They are a group of enzymes that assist information of double or triple carbon bonds by removing a water molecule. Some of the examples are Seriene dehydratase and Arogenate dehydratase.

8. Hydratases

This group of enzymes adds a hydroxyl group by using water molecules. They form an essential part of the fatty acid oxidation pathway.

9. Aconitases

It is involved in Kreb’s cycle where it isomerizes citrate into isocitrate.

10. Chondroitin Lyase

It is an inhibitory enzyme that inhibits the polymerization of its substrate, chondroitin sulphate. It is widely used in medical research.

lyase enzyme example
Chondroitin Lyase as a Lyase enzyme example. Wikipedia

11. Heparin Lyase

They are specific in their action, i.e. they only bring about the cleavage of 1-4 glycosidic linkage in heparin or heparin sulphate.

12. Carboxymethyloxysuccinate Lyase

It belongs to the group of lyase enzymes which cleave carbon-oxygen bonds. This enzyme produces two b-products, fumarates and glycolate.

13. Aspartate ammonia lyase

It is part of the lyase enzyme group involved in the cleavage of carbon-nitrogen bonds. It is essential for nitrogen metabolism as ammonia is one of its significant byproducts.

lyase enzyme example
Aspartate ammonia-lyase as a Lyase enzyme example. Wikipedia

14. Adenylosuccinate lyase

It is involved in the purine biosynthesis pathway. It converts adenylosuccinate to AMP and fumarate.

15. Pyridoxal 5′ phosphate synthase

It catalyzes a multistep ring closure reaction that forms pyridoxine five phosphates. It is involved in the de-novo synthesis of Vitamin B6.

16. Cysteine Lyase

It is involved in cysteine and taurine metabolism. It uses pyridoxal phosphate as its cofactor.

17. Phosphketolase

This enzyme participates in three different pathways namely, the pentose phosphate pathway, methane metabolism as well as carbon fixation. It targets phosphate sugars in these pathways.

18. Dehalogenase

It is involved in cysteine and taurine metabolism. It uses pyridoxal phosphate as its cofactor.

19. Guanylate cyclase

This enzyme catalyzes the formation of cyclic Guanily monophosphate, an important secondary messenger in many cell signalling pathways.

20. Ferrochelatase

It is involved in the last step of the heme group. It catalyzes the reaction in the presence of ferric ions.

lyase enzyme example
Ferrochetolase as a Lyase enzyme example. Wikip

Summary

Our articles discuss different physiologically important lyase enzymes and some of the facts related to different lyase enzymes. Lyase enzymes are found in all organisms and thus make an important class of enzymes. Based on the bond they form and their target substrate, lyase enzymes are further divided into subclasses. Representative examples from those subclasses are discussed in this article.

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25 Ligase Enzyme Example: Detailed Facts

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The word “ligase” means to join or to bind. It catalyses the joining of two macro-molecules by forming new bonds, such as bonds between C-O, C-N, C-S, etc.

Ligase belongs to one of the six classes of Enzymes (Enzymatic classification/EC:6).

In biology, the ligase enzyme is also referred to as “molecular glue” due to its property of joining DNA fragments by catalysing the formation of a phosphodiester bond.

Let’s see some of the Ligase enzyme examples.

1. Aminoacyl-tRNA ligases

The carbon-oxygen bond is formed between Aminoacyl-tRNA. This enzyme is vital for the translation of proteins on ribosomes using tRNA. Here “aminoacyl” refers to an individual amino acid. There are about 25 aminoacyl-tRNA ligases.

ligase enzyme example
Aminoacyl tRNA Ligases as ligase enzyme example
Wikipedia

2. Acid-Ethanol Ligases

The carbon-oxygen bond is formed between acid and OH groups. The ligase enzyme under this category is also called ester synthases. The word synthases depict that the reaction here can be catalysed without the use oF ATP/energy expenditure

3. Olefin beta-lactone synthetases

This enzyme is found in the biosynthesis pathway of olefinic hydrocarbons.

4. Acid-Thiol Ligases

Acid-thiol ligases, as the name suggests, the bond is formed between the carbon of the acid group and sulphur of a thiol group. These enzymes are mainly involved in fatty acid synthesis and secondary metabolites in living beings.

5. Acid-Ammonia Ligases

They are broadly known as amide synthases. It catalyses the ligation reaction between an acid and ammonia by forming a bond between carbon and nitrogen.

6. Peptide Synthases

Peptide Ligases are also called because they catalyse the bond formation between peptides and proteins and some specific substrate. The bond is formed between carbon and nitrogen

7. Cyclo Ligases

They catalyse the formation of carbon-nitrogen bonds within a molecule, thus giving rise to a heterocyclic ring.

8. NAD+ Synthases

It is short for Nicotine adenine dinucleotide synthases. The carbon-nitrogen bond is formed between three important substrates: ATP, NAD, and ammonia.

9. Phosphoribosylformylglycineamide Synthases

It catalyses the reaction by forming a carbon-nitrogen bond, where the donor molecule is Glutamine.

10. Aspargine Synthases

It is one of the housekeeping enzymes in mammals. It is physiologically essential and is involved in the Urea cycle, where it catalyses the conversion of aspartate to asparagine.

11. Carbamoyl-phosphate Synthases

It catalyses the formation of carbomyl phosphate, which is a crucial step in pyrimidine and arginine biosynthesis.

12. Asparginyl-tRNA Synthase

It forms a carbon-oxygen bond to produce L-aspargine. It is also involved in the metabolism of aspartate and alanine.

13. Glutaminyl-tRNA Synthase

It is among the twenty t-RNA synthases involved in the formation of Glutamine.

14. Pyruvate Carboxylases

It is an essential enzyme of Kreb’s cycle where it catalyses the formation of oxaloacetate.

15. Acetyl-CoA Carboxylases

It catalyses an irreversible reaction of carboxyltransferase to form malonyl-CoA.

ligase enzyme example
Carboxyl transferase containing subunit of Acetyl CoA Carboxylases
Wikipedia

16. Propionyl-CoA Carboxylases

It is short for PCC. Dysfunction of this enzyme leads to metabolic acidosis.

17. Methylcrotonoyl-CoA Carboxylases

It catalyses ATP dependent carboxylation of 3-methylcrotonoyl-CoA. The deficiency of this enzyme causes Methylcrotonylglycinuria.

18. Geranoyl Carboxylases

It is biotin containing carboxylase enzyme. Mainly reported in plants and bacteria.

19. Acetone Carboxylases

It is a type of ATP-dependent carboxylase which catalyses the bond formation between its acetone substrate and bicarbonate ion

20. 2-Oxoglutarate Carboxylase

As the name suggests, it assists in bond formation between 2-oxoglutarate and a bicarbonate ion in the presence of ATP.

21. Coenzyme F430 Synthetases

This enzyme has the characteristic feature of containing a tetrapyrrole-derived centre.

22. DNA Ligases

It uses ATP or NAD+ to form a phosphodiester bond between two bases in DNA.

ligase enzyme example
DNA ligases
Wikipedia

23. RNA Ligases

It forms the bond between the 3′ hydroxyl group and the 5′ phosphate group of the RNA molecules. And for this reaction, it needs ATP, which is converted to AMP.

24. Magnesium Chelatase

Its primary role is in the synthesis of chlorophyll and bacteriochlorophyll. It assists in inserting magnesium ions into the porphyrin complex nine core.

ligase enzyme example
Magnesium chelatases as a Ligase enzyme example
Wikipedia

25. Cobaltochelatases

It forms nitrogen-D-metal bonds. It plays a centric role in the biosynthetic pathway of Vitamin B-12.

26. Ubiquitin Ligases

This ligase enables the transfer of Ubiquitin from a carrier molecule to a protein substrate. There are different types of ubiquitin ligases which are substrate-specific.

ligase enzyme example
Ubiquitin Ligase as Ligase enzyme example Wikipedia

Summary

Our post summarised different Ligase enzyme examples based on their specificity for substrates and the bond formation catalysed by the ligase enzyme. It can be concluded that the ligase enzyme is found throughout living organisms and has applications in biotechnology and industrial research.

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31+ Pome Fruit Examples: Detailed Explanations And Images

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This article will give you a description of different pome fruit examples.

Pome fruit belongs to the rose family – Rosaceae, and subfamily – Amygdaloideae. Pome fruit is one of the three primary types of fleshy fruit.

The morphological identity of a pome fruit is an absence of a central stone; instead, it has several seeds grouped in a chamber in between, which can be easily seen on cutting the fruit from the middle. The edible part of the fruit is its fleshy hypanthium. Hypanthium is made from the fused carpels and some accessory tissue of the flower.

The word pome goes back to the 14th century when it was adopted from an old French word –”pomme”, which was used widely to refer to apple-like fruits.

1. Apples

Apple or Malus domesticus is cultivated worldwide with more species richness in Europe and Central Asia. It was brought to these countries by north America, and now it has become a staple fruit there. Apple also holds mythological and historical significance. A famous saying goes, “An apple a day keeps the doctor away” It explains the fruit’s medicinal value attributed to its nutritious juice, which is commercially sold as apple cider vinegar.

2. Alice apples

It is found in Washington; pink blush colour over a creamy yellow background.

3. Ambrosia apples

It was first discovered in Columbia and Canada, primarily glossy red with yellow patches.

4. Cox’s orange pippin apples

Classic English apple. The richness and complexity of flavour make it the most widely cultivated form of an apple. Orange-red colouring

5. Crips pink apples

Its trade name is pink lady, is an ellipsoidal apple mainly traded in Australia. Distinct blush colour mixed with green.

6. Egremont Russel apples

Dry, dull yellow-skinned classic English apple famous from the Victorian era. Known for its sharp and sweet taste.

7. Granny Smith apples

Famously known as green apple, sometimes referred to as sour apple due to its sharp sour taste. It originated in Australia and has been propagated worldwide now.

8. Golden delicious apples

It is a large apple fruit with yellowish-green shiny skin, thus called “golden delicious”. They are mainly used to make applesauce.

9. Fuji apples

These large round apples are mainly cultivated across Fujisaki, Japan. Desirable for breeders and traders for extended shelf life.

10. Honeycrisp apples

It was initially made in a Horticulture research centre as a hybrid of Macoun and Honeygold. They are sweeter, crispier and retain their pigment for long. Also, possessing a longer shelf life has made it a commercial success.

11. Gloster apples

It possesses an attractive conic shape. Mostly loved for its crisp, fleshy fruit.

12. Gala apples

is non-uniform in colour and texture and has a milder taste than other varieties. 

13. Arkansas black apples

The speciality of Benton country, Alaska. Rare fruit with black colour and mix taste of apple, cherry, vanilla and cinnamon.

14. Pears

Belongs to the genus Pyrus of the family Rosaceae, this fruit originated in central Asia and is famously known as Nashpati or Indian pear. It has a unique shape and is used in literature as “pear-shaped”. Just like an apple, it is a fleshy fruit with more sharpness in the texture and a sweet juicy taste.

15. D’anjou pears

Also called Beurr d’ Anjou, it originated in France.

16. Asian pears

One of the most widely cultivated pears. Known for its crisp texture and higher water and juicy content.

pome fruit examples
Asian pear as an pome fruit example
Image credits:Jjok , Shinko Yali and Whangkeum , CC BY-SA 3.0

17. Bartlet pears

Most widely used pear. They are used as a fruit, snack, jam, and marinating beef. It has a strikingly green colour, which develops a bit yellowish tinge on ripening.

18. Bosc pears

As the name suggests, it originated in Belgium. Although it has medium sweetness and a smaller core, they are a typical household due to its lower price and excellent shelf life.

19. Comice pears

It is a large pear with creamy-white and juicy flesh. Skin is greenish-yellow with patches of red. It is loved widely in desserts and thus referred to as dessert pear.

20. Forella pears

Its name comes from its skin texture of freckles of red and green. Its name means trout. Due to their small size, they are also referred to as tiny pears. The flesh is relatively rigid and has less flavour or juice. 

21. Red pears

It is a strikingly distinguished type of pear due to its dark red skin. They are a closer sibling of d’Anjous.

22. Seckel pears

One of the most miniature commercially available pears. Discovered in Philadelphia, they vary in colour ranging from green to yellow and orange-red.

23. Yali pears

It is known for its highest water content. Eating it feels like eating a glass of juice. Its crisp and sweet taste adds to the flavour. Although it has creamy-dull skin, it is one of the popular crops in china, where it is mainly eaten raw.

24. Medlar

Ancient fruit has been cultivated since the time of ancient Greece. It holds significance in the ancient Greek era’s social and historical stories. The fruit’s skin is dull and brown, which still has some remains of the carpels from the flower. However, the fruit is soft in the middle, turning brownish on ripening, giving a rotten look.

pome fruit examples
Medlar
Image credits:Takkk , Mespilus germanica 01 , 
CC BY-SA 3.0

25. Rowans or mountain ashes

It is native to most of Europe, Siberia, and North Africa. Berry like fruit with a bitter taste. They are primarily used in cooking, jam, wine and liquor. The leaves of the tree are also used to make a special herb beer.

pome fruit examples
Rowans
Image credits: Jonik , on August 25,
2004., Rowanberries in late August 2004 in Helsinki , CC BY-SA 2.0

26. Loquat or Japanese plum

It originated from the southern parts of China but was later traded into Japan and became endemic there. However, it contains cyanide in heavy amounts but is widely used in Japan to make sake, a Japanese beer. The fruit possesses medicinal properties and is used in the form of syrups. 

pome fruit examples
Loquat
Image credits:Aftabbanoori , 
Loquat-0 , CC BY-SA 3.0

27. Quince

It is of Caucasian origin with a yellow exterior and a dry and sweet interior. The fruit is loved for its aroma. Due to its remarkable resemblance with the apple, it has been mistranslated in many texts. 

pome fruit examples
Quince
Image credits:Rhododendrons , 
Quince (10889s) , CC BY-SA 4.0

28. Californian holly

Also called Christmas berry. It is a berry-like pome fruit. It was profused and red in its texture. It is an essential fruit in the coastal region of India, where it is eaten fresh or made into juice. The dried form of the fruit is also used widely and sold commercially. 

pome fruit examples
California holly
Image credits:John Rusk from Berkeley, CA, United States of America, 
J20151125-0008—Heteromeles arbutifolia (23303059776) , CC BY 2.0

29. Serviceberry

Also called Western juneberry, a small shrub growing in Alaska and Canada. Although they resemble blueberries, they are pretty different in terms of taste. It consists of an almond-like flavour. Eaten fresh or made into jams and pies.

pome fruit examples
Serviceberry
Image credits:I.Sáček, senior , 
Amelanchier ovalis3 , Wikimedia Commons

30. Chokeberries or Aronia

Antioxidant-rich, this pome fruit is found mainly in northern America. Its antioxidant property makes it a significant component in tea and other beverages. It is a great flavouring agent. One of its variants, Black chokeberries, is titled a superfruit.

31. Hawthorns

Famously known as thornapples, Mainly found in Asia and Europe, this family is a close relative of loquats. The varieties include Chinese hawthorns, oriental hawthorn, Siberian hawthorn, Indian hawthorn etc.

pome fruit examples
Hawthorns
Image credits:Elstro , 
Hawthorn fruit , CC BY 3.0

32. Tejocote

It is a close relative of the hawthorn family native to Mexico and some parts of Guatemala. It tastes and looks like a dried apple. However, it is used widely commercially and medicinally. During Christmas, it served as a famous hot dish – ponche.

pome fruit examples
Tejocote
Image credits:Daniel Manrique ([email protected]), 
Tejocotes2 , CC BY-SA 3.0

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